Jessica Velez

Thank you for the reply! I tried that and unfortunately had the same result: ``` [jvelez@acf-login6 gwas_analyses]$ cd ragtag_output [jvelez@acf-login6 ragtag_output]$ ls c_query_against_ref.paf query_against_ref.paf.log c_query_against_ref.paf.log ragtag.confidence.txt denovo_contigs.corrected.fasta ragtag.correction.agp denovo_contigs.corrected.fasta.fai ragtag.scaffolds.agp...

Sure! Looking at the corrected file, it looks like a "b" has been added to each line. I'm not sure why this would be though? I'm attaching both the preliminary...

Thank you for taking a look! I'll play around with it.