ivivek87

icon indicating a website link https://medium.com/musings-of-scientist

icon company Novo Nordisk A/S icon location Copenhagen, Denmark icon location Teaching myself to let Computer & Biology battle basic 4 letters that make up DNA & RNA. Ph.D. Comp. Biology https://www.quora.com/profile/Vivek-Das-1

Results 7 comments of ivivek87

[bug] Error with UMAP plot generation

The above is solved but I am having the below issue with the UMAP plots. Seems like very redundant and a problem with ggplot2. Not a clear solution found yet....

Add support for CITE-seq data processing

> Hi, I'll work on CITE-seq support using `cellranger multi`, there are example datasets and I've done this analysis before. For `alevin-fry`, I'll let someone else with more experience work...

Dataset not found with LoadData but it is installed

I am having the same issues. Is there a better way now? I am unable to install both Azimuth and signac as mentioned in the [VIgnette](https://satijalab.org/seurat/articles/install.html#install-from-cran). Is there a workaround?...

allow interactive plots in both RStudio and markdown reports

Hi @Shians is this Feature already available? I know there is a markdown compatible function now for the `glMDplot()` but I do not see one for the `glMDSPlot()`. Is there...

allow interactive plots in both RStudio and markdown reports

@Shians , this is very exciting. Thanks for responding. Will definitely try out the GlimmaV2.

Create a "strong" subset - with search terms in abstract or title

I think for now we should not try to push it more for this work. This would be my suggestion. I like the criteria already you have in the Omics...

Implement sample demultiplexing followed by VDJ + feature barcode analysis per sample

Hi @grst and @fmalmeida , Thank you very much for the response and we really appreciate all the amazing work you all have done on this repository. @NNazeu , @herpov...