vasudeva8

Results 9 comments of vasudeva8

bgzip could allow specifying several files

implemented thr' #1642

added thread pool to tabix operations

it showed ~40% improvement in indexing and data retrieval on bed/sam files and ~15% on vcf files.

added thread pool to tabix operations

Updated tests as well.

Demo / sample code update

Spell check and other corrections made.

Demo / sample code update

thanks James, have used this rebased version and pushed it. also the thread pool is shared with input and output files as well, to make it a better sample as...

Demo / sample code update

Thanks for the sample James. The aim of the sample was just to demonstrate the usage of queues and hts thread pool, specifically the 2 different ways of its usage,...

Demo / sample code update

Thanks James and Rob. I have merged and updated the samples. Now they use alignments in chunks and reuses memory. Also the removed lookup / decoding of base from loop...

faidx with bgzf compressed output

Set the default level as 4 instead of -1/zlib default. Man page updated for the same.

faidx with bgzf compressed output

updated makefile and made changes on kstring* to kstring.