valentinaOpazo

Results 6 comments of valentinaOpazo

popscle/tsv_reader.cpp:93 double_field_at] Cannot access field at 5 >= 5

> I seem to be having a similar issue. However, I cannot see how my plp.var file is malformed? Below are the first few lines of the file: > >...

popscle/tsv_reader.cpp:93 double_field_at] Cannot access field at 5 >= 5

My .var.gz file is tab-delimited and has the chr col, so I don't know why I get the error: > NOTICE [2024/03/21 16:00:26] - Loading pileup information with prefix result_demuxlet_SUBSET_updTSV...

popscle/tsv_reader.cpp:93 double_field_at] Cannot access field at 5 >= 5

I share with you this google-drive folder with the 4 output files of dsc-pileup, the .tsv file and the log of Demuxlet with the error https://drive.google.com/drive/folders/1XlRu9eQCnQcB48BLZIVhpC9lgba_rvHb?usp=drive_link

popscle/tsv_reader.cpp:93 double_field_at] Cannot access field at 5 >= 5

@hyunminkang Any news? I tried to run it on differents pc (Linux and Mac) and I got the same issue in both

bcftools mpileup call with empty output

Thanks for your quick answer, I appreciate it a lot! I checked if there are reads in the region and there are (below is a screenshot of the output of...

bcftools mpileup call with empty output

You are right! When I removed `-v` option on bcftools call, the output isn't empty anymore. However, I don't completely understand the output. When do you say that region are...