platanus

> Hello, @yiheng-wang-nv Thank you for answering my question  There is no problem regarding 63 line in decorder.py that error showed. Is it correct to modify it as follows??...

Thank you. @yiheng-wang-nv I edited total 3 files: inference.json, train.json and metadata.json included in 'brats_mri_segmentation_v0.3.3'. There is no problem in corresponding codes. I don't know why it occurs the error...

Edited inference.json code included in brats_mri_segmentation_v0.3.3 { "imports": [ "$import glob", "$import os" ], "bundle_root": "/workspace/brats_mri_segmentation", "ckpt_dir": "$@bundle_root + '/models'", "output_dir": "$@bundle_root + '/eval'", "data_list_file_path": "$@bundle_root + '/configs/datalist.json'", "data_file_base_dir": "/workspace/data/medical/brats2018challenge",...

Edited train.json code included in brats_mri_segmentation_v0.3.3 { "imports": [ "$import glob", "$import os" ], "bundle_root": "/workspace/brats_mri_segmentation", "ckpt_dir": "$@bundle_root + '/models'", "output_dir": "$@bundle_root + '/eval'", "data_list_file_path": "$@bundle_root + '/configs/datalist.json'", "data_file_base_dir": "/workspace/data/medical/brats2018challenge",...

Edited train.json code included in brats_mri_segmentation_v0.3.3 { "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json", "version": "0.3.3", "changelog": { "0.3.3": "update to use monai 1.0.1", "0.3.2": "enhance readme on commands example", "0.3.1": "fix license Copyright error",...

@yiheng-wang-nv I edited only total 6 lines. nference.json -"in_channels" : 1 -ensure_channel_first" : true train.json -"in_channels" : 1 -ensure_channel_first" : true metadata.json -In "inputs" section, "num_channels": 1

@yiheng-wang-nv Someone uploaded as demo video how to edit json files . https://github.com/Project-MONAI/MONAILabel/issues/1051 https://user-images.githubusercontent.com/11991079/194732741-6d55c171-0eb6-4661-97fc-8fa0004897be.mp4 The person input "ensure_channel_first" inside "keys". Then, where should I put "ensure_channel_first"?

Thank you for helping me @yiheng-wang-nv I edited inference.json and train.json code as you let me know. 1. Edited inference.json code "preprocessing": { "_target_": "Compose", "transforms": [ { "_target_": "LoadImaged",...

Dear @yiheng-wang-nv Sorry for bothering you, but let me know how to perfectly run 'Auto Segmentation' using 'brats_mri_segmentation_v0.3.3'.

@yiheng-wang-nv 1. edited inference.json code "preprocessing": { "_target_": "Compose", "transforms": [ { "_target_": "LoadImaged", "keys": ["image"], "ensure_channel_first": true }, 2. edited train.json code "train": { "preprocessing_transforms": [ { "target": "LoadImaged",...