Taichi Araki

Found the bug in ASTNode.toFomula()

5

Hey, all. I used jsbml-1.6.1, current latest version of jsbml, but I found the method, ASTNode.toFormula() fails to parse the formula. To be specific, for testcase, I downloaded BIOMD0000000022.xml from...

Can't run this app on MacOS(M2 Ventura 13.2.1).

4

Hey, all! I installed binary version of this app v3.4.0, and double-click the icon, but app didn't start. After that, I tried previous version, v3.3.0, but it didn't work well....

Errors are detected when running some SBMLTestSuite case.

8

I'd love to use sbscl.v.2.1, so I wrote the wrapper class for SBMLTestSuite using `org.testsuite.SBMLTestSuiteRunnerWrapper`. But in some SBMLTestSuite cases, the same error has been detected. Specifically, the case numbers...

LSODAIntegrator.java is not follow Java conventions.

6

SSIA First of all, thanks to @NeumannArthur for putting together the initial implementation of LSODAIntegrator.java. It's a great starting point for getting things up and running. That said, there are...

Migrate from Maven to Gradle

3

SSIA We need to protect code quality and build CI/CD pipelines, and follow recent Java plugins. To achieve this, we need new build tool, Gradle. Related issue is here: https://github.com/draeger-lab/SBSCL/issues/76

Introduce linters to protect and maintain code quality.

1

SSIA I prefer to introduce [this](https://github.com/nebula-plugins/gradle-lint-plugin), built by Netflix.

Enhance tracability of cache object stored in Amazon S3 as well as GCS

2

SSIA This issue is inspired by https://github.com/m3dev/gokart/pull/445, https://github.com/m3dev/gokart/pull/446.

Migrate GCS from googleapiclient.discovery to google-cloud-storage

2

## Background Luigi's GCS implementation currently uses the legacy `googleapiclient.discovery` API. Google now recommends using `google-cloud-storage` for new applications. I'm one of the contributors of [gokart](https://github.com/m3dev/gokart), so I wanna improve...