Tyler Reddy

WIP, ENH: add docstring cov to html

4

One of the items on the [wishlist](https://github.com/numpy/numpy/issues/12548) for testing docstrings in NumPy / SciPy is the ability to report "coverage" for those docstrings that are probed by doctesting infrastructure. In...

Fixes #16773 * About ten years ago in 5bdd16ddbc, Pauli matched upstream behavior by explicitly accounting for the internal point at infinity that `Qhull` adds when the `Qz` option is...

If you work with in-house spackages that use the old `from spack import *` (which apparently was replaced in gh-30404), and update from an older `spack` checkout, your `spack` environment...

Commit Hash Access in Compiled API

5

The [recently added](https://github.com/xianyi/OpenBLAS/pull/1890) version number availability for `openblas_get_config()` is [already proving useful](https://github.com/numpy/numpy/pull/12523) in our project to verify binaries built via linking to openblas (i.e., make sure an old system-level openblas...

Some initial testing with awkward array

4

I've been meaning to give [awkward array](https://awkward-array.readthedocs.io/en/latest/) a try because lipid and protein "residues" with different numbers of atoms seemed like a potentially good fit for the description: > Awkward...

BLD: install issues on M1 mac

12

`python3 setup.py install --user` on the gcc compile farm M1 machine manages to build MDAnalysis, but then it tries to install deps, and `gsd` cannot be built from source: ```...

Pull in a non-public dependency to envs?

1

When using `virtualenv` to build the benchmarking environments, do we have a way to specify Python project dependencies that are not available on PyPI? Use case might be a small...

WIP, CI: 3.11rc2 check

6

* Python 3.11rc2 is guaranteed ABI stable with the final release per: https://www.python.org/downloads/release/python-3110rc2/ * the final release is about two weeks away, so let's see what goes wrong with `3.11`...

MAINT: Cython lint

3

I saw [`cython-lint`](https://github.com/MarcoGorelli/cython-lint) [used successfully upstream](https://github.com/scipy/scipy/pull/17014) and ran it on MDAnalysis out of curiosity (below). Maybe some straightforward fixups we could accept. `cython-lint MDAnalysis/lib/*.pyx MDAnalysis/coordinates/*.pyx MDAnalysis/analysis/encore/*.pyx` ``` MDAnalysis/lib/c_distances.pyx:38:24: 'fabs' imported...

MAINT: improve auto-labeling

2

I should mention that the approach to auto-labeling that we currently use for PRs and stuff was rejected upstream and replaced with something that is supposed to work better re:...