David Twesigomwe

icon company Sydney Brenner Institute for Molecular Bioscience icon location Wits University, Johannesburg icon location Bioinformatics scientist in the making

Results 4 comments of David Twesigomwe

Including advanced options for graphtyper genotype_sv

Hi, I think the general advanced options such as --sam_flag_filter, --primer_bedpe, --no_filter_on_proper_pairs can do because they are not specific to calling SNVs only. Thanks, David

Including advanced options for graphtyper genotype_sv

Alright, cool Cheers, David

SNV discovery from PacBio or Nanopore data

Okay, great. Thanks Hannes.

SNV discovery from PacBio or Nanopore data

Hi Hannes, I tried using `graphtyper_lr` for variant genotyping using PacBio data—however `indels` were not genotyped/called. Is there an option I could supply to enable genotyping for both `indels` and...