Mark Andrew Miller
Mark Andrew Miller
I just pulled Karma from GitHub yesterday. I'm using PostGres 11 on Ubuntu 11. Should I be able to make this work? I was feeling optimistic because of the closed...
It's easy to see for yourself with the [Ontology Access Kit](https://incatools.github.io/ontology-access-kit/interfaces/search.html) ```shell runoak --input sqlite:obo:envo search 'l/biome$' .not .predicates=i .descendants biome | grep -v obsolete ``` > ENVO:01000174 ! forest...
I have found the [ENVO Robot template and merge workflow wiki page](../wiki/ENVO-Robot-template-and-merge-workflow) very useful. In fact, I implemented most of it, including `wget`-ing the template from Google Sheets in a...
"rain forest" is in one of the ROBOT-style Google Sheets that I've been asked to review and execute. The proposed definition is > A forest ecosystem which has tall and...
Thes terms appear to lack textual definitions - ENVO:00002043 'wastewater treatment plant' - ENVO:00002272 'waste treatment plant' - ~~ENVO:00003043 'sewage plant'~~ Mentioning @jagadishcs because some of his term requests in...
@pbuttigieg recently suggested switching to Dublin Core annotation properties, as opposed to of oboInOwl. The NMDC team has been using oboInOwl in our templates, like [NMDC-03_EnvO_template_robot_sheet](https://docs.google.com/spreadsheets/d/12GICSjx2s3Ey0Crv9uMdkW8unt3LxPcOS2_u7EMAr38/edit#gid=2055246414) - oboInOwl:created_by - oboInOwl:creation_date^^xsd:dateTime...
will provide test by 2022-01-25
I can't seem to get linkml-sqldb dump to work with the --module argument. It says > UnboundLocalError: local variable 'sv' referenced before assignment It does work with the --schema argument...
https://linkml.io/linkml-model/docs/identifier/ should at least say `0..1`
Users who have developed familiarity with LinkML CLI tools may be tempted to use Python's system call to wrap the CLI tool. We should make it clear how to use...