Tunca Dogan

Results 10 comments of Tunca Dogan

Thank you for your interest in DEEPScreen. The actual binding affinity is not included in the prediction since we binarize all training data points as active and inactive before the...

Hi, thank you for your interest and sorry for the late reply. I cannot see your original question at the moment but I believe you asked how can you produce...

No problem at all, glad that it helped. Yes, we could not retrieve that damaged package and after that, we moved to the new version of DEEPScreen. This means that...

Hi, we currently do not have a ready-to-use module inside the platform for molecule image drawing. However, we are using RDkit for this, as explained here: https://www.rdkit.org/docs/GettingStartedInPython.html#drawing-molecules Here is a...

> Excuse me again. Does this model only need to prepare labeled data sets for each protein instead of inputting protein information? Yes, proteins are used as labels in DEEPScreen,...

Thank you for the query. We did not know about the issue, we are looking into this. I'll let you know as soon as we have an answer for both...

Swagger interface of CROssBAR will be unavailable due to an XSS vulnerability, until we find a valid solution. However, CROssBAR API still works without a problem. You can directly submit...

Sorry for the inconvenience and thank you for notifying us about the problem, we are currently working on this and will solve it as soon as possible.

This is not possible for our method/tool (and for most of the available methods/tools), though this is an exciting area of research in the literature.

Hi, then it may be related to SMILES. Could you please check whether the SELFIES representations were correctly generated? Another thing to check might be the data balance, although the...