Raju Kumar

icon company Queen Mary University of London icon location London icon location Postdoc at Blizard Institute│Organoids│Single Cell Multi-Omics│Spatial Transcriptomics & Proteomics│Adaptive Immune Receptor Repertoire│T cells

Results 3 issues of Raju Kumar

cell types are not in same order from left to right in both datasets when comparing two group of samples

2 comment

I am comparing two groups of samples using Comparison analysis of multiple datasets using CellChat vignette. While using the "(B) Compare outgoing (or incoming) signaling patterns associated with each cell...

What Communication probability value is to be considered for a believable interaction?

3 comment

Hello What Communication probability value is to be considered for a believable interaction? Vignette https://htmlpreview.github.io/?https://github.com/jinworks/CellChat/blob/master/tutorial/CellChat-vignette.html Figure 'CXCL signaling' heatmap legend has a max of communication probability 0.15, meaning 15% of...

Identify dysfunctional signaling by using differential expression analysis

Hello Jin, Thank you very much for creating this nice tool. I have used the below-written script and generated net file for the interaction pair. ``` #Identify dysfunctional signaling by...