tsvvas

`boundary_polygons` not defined. Baysor v0.6.2

3

Hello Baysor team, I tried to run Baysor in jupyter notebook, however the function `bound_polygons` mentioned elsewhere produced an error – not defined. Also I noticed that this function as...

Installation issue (dependency error).

10

Hello CellScopes team, I have encountered a dependency error while installing the CellScope package – Unsatisfiable requirements for package ImageTransformations. Here is the traceback: ``` ERROR: Unsatisfiable requirements detected for...

Image rendering is very slow for xenium morphology image

1

Hello @LucaMarconato! I noticed that rendering of xenium morphology images takes 10+ minutes each time. I run the code on a server and have enough memory to fit the image...

Q: How to render xenium morphology image with original colors?

15

Hello @LucaMarconato! Thank you very much for this tool. I want to plot a part of morphology image acquired with xenium + multimodal segmentation kit. It is loaded into spatialdata...

Hi spatialdata team, It seems that the parser function for cosmx data appends path to the file name two times: first, when checking whether the file exists, and second, [when...