tstokowy

Hi, I use docker container (the tool is very useful for our projects!). It seems that id does not include proper fonts for plotting of png files in the container....

Hi I managed to solve this by mounting /usr/share/fonts/ : /usr/share/fonts (I use Docker). It took quite some time to find this solution...

Hi, I am experiencing similar issue - VM, 32 threads, 64GB RAM. Could you provide the experimental container? Btw, thank you for outstanding work while making this software available for...

Hi, is there any chance you could recommend suitable alignment pipeline and reference for ClinSV, preferably in Docker? I am currently using cgpmap (https://github.com/cancerit/dockstore-cgpmap). The pipeline results in a single...

Brief update: Speedseq alignment of raw reads to reference provided in the test data GRCh37d5 (https://nci.space/clinsv/refdata-b37_v0.9.tar) solves the problem. SV analysis finished, results are promising. We will run some further...