Tuukka Norri

cst-byte-test/child and cst-byte-test/edge fail when assertions are enabled

7

The unit tests in question fail when compiled without `-DNDEBUG`. Steps to reproduce: 1. Clone sdsl-lite. 2. Remove `-DNDEBUG` from compiler flags by e.g. [patching](https://github.com/simongog/sdsl-lite/files/171657/cmakelists.txt) `CMakeLists.txt`. 3. `cd build; cmake...

– Fixes #279.

xa2multi.pl outputs RNEXT w.r.t. original alignment

1

If an alignment record has `=` for RNEXT and the XA tag lists an alternative alignment to some other reference for the segment, then xa2multi.pl will copy the `=` to...

Fixes #390.

Make filtered_graph conditionally model the underlying graph

2

According to `filtered_graph`'s documentation, the refinements of the model of the underlying graph are optional.

Apply std::remove_const before passing Graph to graph_traits in filtered_graph

4

For instance `detail::residual_graph` explicitly applies const to the graph. Consequently graph_traits would have to be defined also for the const graph type, but [the LEDA graph example](https://www.boost.org/doc/libs/1_86_0/libs/graph/doc/leda_conversion.html) does not seem...

Unable to clone vg recursively

5

**1. What were you trying to do?** `git clone --recursive https://github.com/vgteam/vg.git` **2. What did you want to happen?** Have a clone of the repository and its submodules **3. What actually...