tsjain

Results 4 comments of tsjain

In lines 201 and 202 of the code, both alpha and alpha_bar use the same set of parameters.

Yes. I had the same question about the calculation of the sequence posterior. Can the authors please comment?

Data pre-processing pipeline

I have the same question. The paper mentions that 40% of OAS sequences are missing residues at the N-terminus. Were they filtered out or were the missing amino acids masked...

Potential bug in chain_center_of_mass_loss?

I agree that this looks like a bug as well.

Uninitialized weights: `extra_msa_stack.blocks.3. msa_att_row` and related for OpenFold Multimer

Not sure, but this might have to do with the outer product mean for the extra_msa features being moved to the beginning in the evoformer block in Multimer (section 7.7...