Timothy Bergquist

Is there a resolution to this error? I keep running into this problem. I've been using pandas dataframes and I've tried changing data types with the same result. Thanks!

I can't post all the data, but I've included a small print out of the data below. ``` data = pd.read_csv("path/to/data.csv", nrows=100) data = data.set_index("sample_id") data = data.astype(np.float64) data_phate =...

The issue isn't the size of the data, it's sensitive biomedical data that I don't have permission to upload in full.

But what you're seeing in my comment above is pretty much what it looks like.

So here are some results from this code. ``` print(phate.__version__) 1.0.4 print(s_gd2.__version__) 1.7 print(np.all([d == np.dtype('float64') for d in data.dtypes])) True print(np.all(np.isfinite(data))) True print (data.values.min(), data.values.max()) 0.0 10000000.0 ```

So the update didn't fix the issue and when I ran the zipping and pickling code, I got this error. ``` Traceback (most recent call last): File "feature_reduction.py", line 94,...

Here is the kernal. [kernel.pickle.gz](https://github.com/KrishnaswamyLab/PHATE/files/5929087/kernel.pickle.gz)