parascopy
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tprodanov
Copy number estimation and variant calling for duplicated genes using WGS.
Hello tprodanov, I am fortunate to learn about Parascopy developed by your team, which happens to align perfectly with my current work. I have attempted to create a pretable.bed.gz file...
Within the conda environment, the command parascopy pretable --force --fasta-ref ref.fa --output pretable.bed.gz is not able to find bedtools. Probably it is not installed in the environment.
Hello, Thanks for the tool. I would like to ask if it's possible to use it with long-reads (ONT) and if so, which parameters should be adjusted in parascopy depth...
hello, it's a very nice tool，can use it for nanopore long sequencing data？
Hi @tprodanov, Thank you for creating this tool. I want to try it for the cattle genome. Could you show me the format of the BED file for the parascopy...
Can parascopy be used to detect larger duplications e.g. a 1.4 Mb in chromosome 17p11.2 based? If so, would 30x fq hg38 data like in this example work? ``` @E100046761L1C001R00300000033/1...
