Taylor Priest

Hi all, Any further developments on this issue yet? I am having exactly the same problem as originally posted by bpucker. Everything runs fun, the short read assembly also looks...

Thank you for the reply. Yes I am currently using the conda installed version. I will build from source and let you know the result. Many thanks -- Taylor Priest...

Hi @haghshenas I built the haslr package from source and then tried to re-run the assembler. It results in this line appearing: 'checking haslr_assemble: failed' Everything appears to be compiled...

Hi @haghshenas Yes I compiled the code using make and there were no errors during compilation. Running haslr_assemble -h does indeed print the help menu, so it seems very strange...

Hey @Vini2 Thank you for the quick response. I have cloned the git repository and recreated the conda environment. Now I am receiving the following error: > 2023-01-06 10:03:56,636 -...

Hey @Vini2 I am using the same graphbin2 command that I originally posted: `graphbin2 --assembler Flye --graph assembly_graph.gfa --contigs assembly_edges.fasta --binned metabat_contig_assignments.txt --abundance contig_depth.txt --output graphbin2_output/` Many thanks!

I would also like to know. It would be helpful if there was a description provided for each of the main output files, along with what the columns mean. Not...