Thomas Pfau
Thomas Pfau
Adding support for additional annotations in SBML export. **I hereby confirm that I have:** - [X] Tested my code on my own machine - [X] Followed the guidelines in the...
I was trying to optimize the GPR parsing code using existing implementations for boolean formula/sat solving processors and found one oddity in some formulas: There are sometimes genes which have...
When initializing dynamic FBA it assumes, that exchange reactions which can take up metabolites and are assigned a 0 concentration will be non limiting. Essentially, those initial concentrations are set...
Currently, `optimizeCbModel` returns a solution with plenty of fields which are redundant e.g. v, x, full for the variable value f, obj for the objective value Which are partially undocumented...
I tried to write a test for checkConsistency and findStoichConsistentSubset using the following network: ``` % A -----> B ---> C --> E % \ ^ % \ / %...
This is somewhat related to #223. I'm currently trying to include some js verticles into a bigger java project. As a minimal example I have a helloVert.js : ``` vertx.eventbus().consumer("hello.vertx",...
#### Problem description This is nothing directly to do with memote directly, but since memote aims at improving model quality, I think it will reach the right people here. When...
If you do not know the root cause of the problem / bug, and wish someone to help you, please post according to this template: ## 🐛 Bugs / Unexpected...
This PR adds the `stream_options` and `include_usage` fields as defined in the OpenAI API reference to the server. Set to false by default they can be activated which leads to...
Hi, I'm running into an issue, and maybe someone got an idea from the description, as I'm not sure, whether I can actually share the source document for this issue....