tparket

Hi @martin-steinegger, I'm getting a similar (though not identical) error while trying to run indexdb on a nucleotide database that I would like to search repeatedly. ### Commands to reproduce:...

Thanks for getting back to me so soon. Please find the files* attached. [Archive.zip](https://github.com/daler/pybedtools/files/10055832/Archive.zip) *these are not the original files, but randomly generated intervals. Nevertheless, I’m getting the same errors.

@ctSkennerton it fixed it, thank you! I also noticed another minor issue - the string "##gff-version 3" is printed many times to the .gff output, making it ~99% of the...