wgbs topic

Analysis pipelines for genomic sequencing data

igordot

A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine r...

ben-laufer

Differential methylation: Easy, Fast, Identification and ANnoTation

hhg7

A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)

ben-laufer

A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.

jlab-code

ENCODE whole-genome bisulfite sequencing (WGBS) pipeline

ENCODE-DCC

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

itsvenu

Multi-omics analysis protocols by Lyu.

sajuukLyu

TFregulomeR reveals transcription factors’ context-specific features and functions

benoukraflab