Daniel
Daniel
I hit the same problem today in fmriPrep 21.0.2 using Docker --> singularity build. ``` RuntimeError: Command: antsApplyTransforms --default-value 0 --float 1 --input /work/fmriprep_wf/single_subject_DPOP022_wf/func_preproc_ses_1_task_rest_run_7_wf/bold_split/vol0001.nii.gz --interpolation LanczosWindowedSinc --output /work/fmriprep_wf/single_subject_DPOP022_wf/func_preproc_ses_1_task_rest_run_7_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym.resnative/bold_to_std_transform/vol0001_xform-00001.nii.gz --reference-image /work/fmriprep_wf/single_subject_DPOP022_wf/func_preproc_ses_1_task_rest_run_7_wf/bold_std_trans_wf/_std_target_MNI152NLin2009cAsym.resnative/gen_ref/tpl-MNI152NLin2009cAsym_res-02_T1w_reference.nii.gz...
When I run my container again with the `work` directory bound to `/tmp` this issue went away. Part of the error message says a file lock is not obtained. I...
Same issue with Nexus 7 (flo). The download is taking an extremely long time. I'm tempted to read the ABD docs and do this manually. The files do not look...
I don't understand why this works, but it did: https://stackoverflow.com/questions/52374356/cartopy-examples-produce-a-segmentation-fault
Thank you for the atlas info I couldn't find that information in the online docs. WRT to R and Python environments, I'm suggesting the use of cmake variables rather than...
Is that `curl` command in the doc ? I didn't see it. It's in my personal build notes now.
UPDATE: The cache clearing didn't help. Plus the call is probably wrong since this the device is not `cuda`. Attempting another idea, to explicitly use `float16` datatype rather than what...
I've been doing more research on this issue. I believe it has to do with how the Linux kernel uses file locks on an NFS mounted file system. This will...
I'm not a developer or expert with this program. However, I'd say no. Those are just FSL programs. They use CPUs and can use multiple threads. AFAIK, nothing in the...
That's a good idea but it didn't help. I set `selinux` into permissive mode, rebooted and received the same error. This new storage is a cluster so I was hoping...