Tom Ouellette

Hi there, I'm having similar issues installing the most recent release of python-javabridge on macOS Monterey (v12.6.1). I posted the error report below. However, for anyone facing this issue the...

Plot updates

1

"`guides( = FALSE)` is deprecated. Please use `guides( = "none")` instead. " Here are all the paths that needed updating: > [mobster/R/plot_boostrap_coclustering.R](https://github.com/caravagnalab/mobster/blob/4c9ac3decf32bb28737c798f87bbdcb27e9a46ff/R/plot_boostrap_coclustering.R) > [mobster/R/plot_mixing_proportions.R](https://github.com/caravagnalab/mobster/blob/4c9ac3decf32bb28737c798f87bbdcb27e9a46ff/R/plot_mixing_proportions.R) > [mobster/R/S3_methods_plot.R](https://github.com/caravagnalab/mobster/blob/4c9ac3decf32bb28737c798f87bbdcb27e9a46ff/R/S3_methods_plot.R) >[mobster/R/plot_gofit.R](https://github.com/caravagnalab/mobster/blob/4c9ac3decf32bb28737c798f87bbdcb27e9a46ff/R/plot_gofit.R) >[mobster/R/plot_fit_scores.R](https://github.com/caravagnalab/mobster/blob/4c9ac3decf32bb28737c798f87bbdcb27e9a46ff/R/plot_fit_scores.R) >[mobster/R/plot_boostrap_Beta.R](https://github.com/caravagnalab/mobster/blob/4c9ac3decf32bb28737c798f87bbdcb27e9a46ff/R/plot_boostrap_Beta.R) >[mobster/R/plot_boostrap_tail.R](https://github.com/caravagnalab/mobster/blob/4c9ac3decf32bb28737c798f87bbdcb27e9a46ff/R/plot_boostrap_tail.R)...

Assigning to X after initializing as NoneType

2

### Please describe your wishes and possible alternatives to achieve the desired result. This issue is likely related to #464. So the current functionality allows for a NoneType assignment to...

OME-TIFF specification

1

I would like to be able to encode and decode tiff images that follow the OME-TIFF/OME-XML specifications. My specific use case for this functionality is in microscopy imaging or bio-imaging...

Hi spreka, I was wondering if you could elaborate a bit more (or point to the code) that covers the following statement from your paper. In your paper you state,...