Tobias "Tobi" Schraink

5.1.4 t, df, p, and estimates are not identical between lm and t.test but text says they are

2

Under section 5.1.4 in https://lindeloev.github.io/tests-as-linear/#51_independent_t-test_and_mann-whitney_u, it says to notice the identical t, df and estimates but the df are not identical. Is the t even in the tables? Is it...

Docker pathname Error in Windows 7

2

I got the following error when trying to execute the launch-container.bat executeable My computer is running Windows 7, Servicepack 1 ```PS C:\Users\Tobias\Documents\Docs\Clubs\Conferences\2017 July Scipy\Tutorials\scipy-2017-cython-tutorial> .\launch-container.bat C:\Users\Tobias\Documents\Docs\Clubs\Conferences\2017 July Scipy\Tutorials\scipy-2017-cython-tutorial >REM 2017-06-26...

Add phosphodisco release v0.0.1

2

First release of phosphodisco, a python package for finding co-regulated phospho sites from phosphoproteomics and proteomics data. ---- Please read the [guidelines for Bioconda recipes](https://bioconda.github.io/contributor/guidelines.html) before opening a pull request...

Typo in data-dependent-conditional-execution docs

1

**Is your feature request related to a problem? Please describe.** The second code block in the [data-dependent-conditional-execution docs](https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#data-dependent-conditional-execution) is confusing, and I think it is because there might be a...

I get the following stacktrace when I run the `pip install` given in the README.md. ```python >pip install https://github.com/sosign/scrapy-webdriver/archive/master.zip ``` ``` Collecting https://github.com/sosign/scrapy-webdriver/archive/master.zip Downloading https://github.com/sosign/scrapy-webdriver/archive/master.zip \ 20kB 2.6MB/s Complete output...

Quality Scores in illumina reads too low

2

Hi, sickle always gives me an error when I specify -t illumina, telling me that the quality value of some read does not fall within the correct range for Illumina...

Stdout is empty

3

Hi, I am working off a SGE cluster and am trying to use SCITE but my stdout and stderr files are empty even though when I use scite from the...

## Expected behavior When switching Group By from *Type* to *Tag*, I'd expect cards I haven't tagged yet to retain their card type as a tag. This is definitely an...

Installed via bioconda, got the following error: ``` Traceback (most recent call last): File "/scratch/schrat01/gff3_toembl_env/bin/gff3_to_embl", line 4, in __import__('pkg_resources').run_script('gff3toembl==1.1.4', 'gff3_to_embl') File "/scratch/schrat01/gff3_toembl_env/lib/python3.7/site-packages/pkg_resources/__init__.py", line 66 6, in run_script self.require(requires)[0].run_script(script_name, ns) File...

TransferReadTags is unable to delete temp files

1

# Bug Report ## Affected tool(s) or class(es) TransferReadTags ## Affected version(s) ``` ❯ gatk --version Using GATK jar /data1/shahs3/users/schrait/envs/bioinfo/share/gatk4-4.6.1.0-0/gatk-package-4.6.1.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -jar /data1/shahs3/users/schrait/envs/bioinfo/share/gatk4-4.6.1.0-0/gatk-package-4.6.1.0-local.jar --version The...