Ted Natoli

...still starting up...

1

Hello, This looks like a very useful library and I would very much like to take advantage of it. However, I am having a problem getting it working. I am...

This function should support specifying an arbitrary subset of columns to use as reference for computing the median and MAD statistics.

https://github.com/cmap/cmapR/blob/b804d22b701021487591f810045869b98477e089/R/utils.R#L439

right now, the GCT initialize method doesn't do any checking to ensure this if the user passes a predefined rdesc or cdesc object

for example, when updating cid, this method should handle updating the matrix column names and the id field in cdesc

Result discrepancy when using AlphaFold DB vs. individual PDB files

1

Hello, I have a question about the discrepancy I'm seeing in `foldseek easy-search` results when querying a custom DB with the `afdb` database and individual PDB files. I have created...