Reka Toth
Reka Toth
Hi, Do you have any updates on this issue?
Hi, I have the same problem. I have Snakemake 7.19.1 Is there maybe any workaround to use until the bug is fixed? Thanks!
Hi, It seems your meth object is a list, because you did a snp filtering before plotting. This gives back a list, with your snp filtered methrix object being meth$snp_filtered....
Closing due to inactivity.
I am sorry, I somehow missed this issue. Are you using the h5 (DelayedArray)? If you are keeping the object in the memory, it can easily fill that much. Also,...
Closing due to inactivity.
Hi @PoisonAlien, Good idea! I am working with ONT data a lot, I often read in modkit output. I just have to add it to methrix. Let's talk once, I...
Hi Anand, It looks interesting! We were focusing only on 5mC or 5hmC, so your approach seems superior to that. We will give it a try. Do you think it...
Hi, I am testing it now. I am using DNA methylation from cfDNA, so not all the sites are covered. However, I am wondering why I end up with such...