Tim Treis

Another month, another fix. The solutions described above didn't work for me when using a Keras predictor as compared to for example a XGB predictor. Therefore, I now rebuild the...

Depends on where we draw the line in "healthy vs control" vs "perturbation screen" imho? What do you think? The first could basically be "simple" matrix comparisons, the latter must...

With @Zethson we're currently scoping out something that goes more in the direction of a perturbation screen, so I feel like there'll need to be tools for both. I don't...

let's rename both and make this one about the screen then, if the other one already contains the group comparison discussion

Hey @LLehner, let's discuss the feature in this issue. Here there's the monkeybread package that we mentioned during the meeting: https://monkeybread.readthedocs.io/en/latest/

Amazing, thank you! Could you also briefly look into the respective requirements? Ideally I'd hope that there is a small subset that we can add without adding to our dependencies...

Hey @giovp, this feature was coming out of a discussion with @maiiashulman. We ran into a situation in which the "literature-curated" signature for hypoxia was either 20 or 4000 genes,...

Hey there! Could you also provide your plotting backend? Your code also works for me. ``` print(matplotlib.get_backend()) #-> module://matplotlib_inline.backend_inline for jupyter ```

Does the issue persist with a fresh conda env?

Using `extent` and `origin` I can pretty much place the pixel anywhere I want but the default also seems to be the center of the pixel, like Napari. I personally...