Tim Sterne-Weiler
Tim Sterne-Weiler
Hi, I'm getting an error when I try the sample code in examples/plot_kegg_relations.py. It seems the parse_kgml_pathway() function is the culprit. Am I missing something? ```python from pylab import *...
This PR proposes to update the Whippet.jl license to LGPL2.1 for the next release of Whippet. This will require than any and all future versions of Whippet remain open-source and...
This PR changes the default of `whippet-delta.jl` to a read-depth independent method of differential splicing. The current default is still available using the optional command line flag `--use-depth`.
- [ ] Re-implement threaded.jl for multithreading performance Moved from #29
It would be nice to integrate a visualization tool like sashimi plots or write a fast version
This seems like it should improve the accuracy of K1 events. However the current implementation in the `mappability` branch actually slightly decreases, rather than improves accuracy.
This seems to be a necessary feature for those who would rather substitute a little performance for more exhaustive mappability. A multiseed 'stitching' implementation should overcome the major caveat of...
There has been a substantial interest in a Whippet feature to use all edges to produce full isoforms. - [x] Alter annotation support to load all known edges. - [...
This is could go either way, for now it is on hold. @weatheritt2 any preferences?
This is moved from #14