Cong Cong

icon location I am a graduated Ph.D. student at UNSW, and my main research focus is medical image analysis and deep learning.

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Is it possible to use pyvips to read a certain level of whole slide image and convert it to numpy array?

Thank you @jcupitt for the quick reply, I try to read level 0 image from the whole slide image, the image on level0 is of shape(217088, 103936, 3), the following...

Is it possible to use pyvips to read a certain level of whole slide image and convert it to numpy array?

> Is this for training a NN? Yes

Is it possible to use pyvips to read a certain level of whole slide image and convert it to numpy array?

> There's some code here for fetching small patches from a large slide for training: > > [#100 (comment)](https://github.com/libvips/pyvips/issues/100#issuecomment-493960943) > > If you want larger patches (1024 x 1024 etc.)...

Is it possible to use pyvips to read a certain level of whole slide image and convert it to numpy array?

Hi @jcupitt , Just a quick question, after I load the whole slide image using `pyvips.Image.openslideload`, I realize that the loaded image has 4 image bands, I then check the...

Why use logits without exp() and log() - torch.log(exp_logits)

Because if you take the log over the exp, it gives the original value of logits.

What is the 'init.pth'

> without it, the training can sometimes take a very long time to even start to converge on the Camleyon16 dataset. It is trained with a few interactions on the...

Out of memory during eval but not train?

@gianfrancodemarco Thanks for the insight, however I could not find the codes you mentioned in their repo, do you mind telling me where can i find the related codes?