Thomas
Thomas
You can look at this discussion on how to dump each chromosome to a file: https://github.com/open2c/cooler/discussions/344#discussioncomment-6979779
Issue fixed by: #383
This issue seems to have been resolved upstream by numpy several years ago. I'm closing this issue -- reopen again if necessary.
Closing since issue is very old and documentation has been updated several times.
We haven't heard back. I'm closing this now, but we can re-open if you encounter this issue again.
https://cooltools.readthedocs.io/en/latest/cli.html#cooltools-rearrange allows rearranging data according to a new genomic view and allows this feature.
thomas@MacBook-Air-TR joint-pca-hic % poetry add cython The following packages are already present in the pyproject.toml and will be skipped: • cython If you want to update it to the latest...
So I ran what poetry suggested: `pip wheel --use-pep517 "cooltools (==0.5.4)"` and it built a wheel for me. Then I added `cooltools = { file = "lib/cooltools-0.5.4-cp311-cp311-macosx_13_0_arm64.whl" }` to pyproject.toml...
I would if I knew how. Do you have any pointers? The issue seems to be that cooltools requires cython to build. It installs with pip if cython is already...
My previous comment about opening a database over https wrong. Never mind.