Thomas Hitch

icon company RWTH Aachen icon location Postdoc at RWTH Aachen, Uniklinik Areas of interest; Metagenomics, Bioinformatics, Genome assembly, Microbial ecology

Results 2 issues of Thomas Hitch

Error finding ModelSEEDDatabase variable

3 comment

I have followed the instructions in creating the ModelSEEDDatabase variable as shown below; thomas@Kiwi:~/PyFBA$ echo $ModelSEEDDatabase /home/thomas/PyFBA/ModelSEEDDatabase However when I test the setup.py code the following occurs; thomas@Kiwi:~/PyFBA$ python setup.py...

Where is the output database?

Trying to make a custom database for a predicted proteome from a microbe. Below is the command I have used: ``` docker run -ti -v $(pwd):/mnt fcyucn/fragpipe:23.1 /bin/bash -c "/fragpipe_bin/fragpipe-23.1/fragpipe-23.1/tools/Philosopher/philosopher-v5.1.2...