teixeiramm

Hi Jon and Jason, I am still having the same problem and was not able to fix that problem of my fastq. I am trying to train a Sarocladium genome...

Jon, I feel ashamed but could you please send me the sed command that would work for this? My skills are very limited. I appreciate it. Em qui., 9 de...

you might try bbtools repair.sh https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/repair-guide/ --- Jason E Stajich, PhD Professor, Dept of Microbiology and Plant Pathology Chair, Academic Senate, Riverside Division University of California, Riverside Fellow, CIFAR Fungal...

The read files look like this now. But still having the same error.😶 @1/1 NTCAAGAAATGTTGTCAATGCCGATGTCGAAGATAAAAAAGAAAAAACAGCGTTAGCTTGTCGTTTTGCATGTCCGTCAGATCCCAGAGAAAGCGAAGAAAAAGTCTATACAGCCCGAAGATGTAGATTTGTGCCGCTGTGCAAAATAGA + #FFFF:FFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFF,:FFFFF:FFFFFFFFFFFF:FFF:FFF:FFF,FFFFF,FFFFF::F::F:FFFFFF:FF:FF,FFF:F::FFFFFFFF:,FFFFFF:FFFFFFF:FFFFFFF,,:,:FFFF @2/1 NTTCTCGGTATCACAGGCAAGGACTTCACCTTGATCGCCGCATCGAAAGCGGCGATGCGAGGTGCCACTATCCTTAAAGCTTCCGACGACAAGACAAGAGCCCTCAACAAGAACACTCTCCTGGCGTTCTCAGGAGAAGCCGGTGACACA + #FFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFF:FFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF:FFFFFFFFFFFFFFFFFFFFFFFF:,FFFFFFFFFFFF @3/1 CTAACATATTTAAAGTTTGAGAATGGATGAAGGCTAAATAGCGCCCCCGGGTCCCTAAACATTAGCTTTACCTCAAAAAACTGAGTTAAAAAATGCTATACTGAGAGATAGGAAGAGCACACGTCTGAACTCCACTCAAGGTACCATATC + FF,:FFFF,FFFFF:FF:,F::F,FF:,FFF,F,FFFFFF:::,F::FF,FFF:F,FF,,F,,,,:F:F:F,FFF,FFFFFFF:,FF,F:,F,F,,FF,:,F,,::,FF,,:,FFF,,FFF:,,F,,FF,F,:F,F,F,:FFF,,,F,F: Em qui., 9 de dez....

I am still having issues with this. On Sun, 28 Aug 2022 at 21:40 Chris Smith ***@***.***> wrote: > Hey Jon, > > I'm having the same problem as this....