tbrunetti
tbrunetti
@loraince thanks for sharing this. I too am going to use deepTools2 for a ChIP-seq experiment (not ATAC) and I wanted to confirm that your bed output from chromap converted...
This is very helpful, thank you! Out of curiosity are these commands also supported on macs3, or should I strictly use macs2?
I get this error consistently on SLURM as well but mine is only a heartbeat error, nothing to do with memory or resources. Interestingly, it only happens with some seeds....
@ChristineMarie I am having weird issues as well. It is taking a really long time to index two genomes and it has been hanging for a full day. Were you...
I was having problems too and it seems that the newer version of boost don't seem compatible. The only way I have gotten this to work is by using their...
I have a follow up to this -- does that mean 0/0 should just be treated as missing if monopogen would never call a 0/0? I have way too many...
So I have ~300 samples and I have them joint called in monopogen with the samtools mpileup. However, I don't think I see anything that has a missing call, which...