Timothy Rhyker Ranallo-Benavidez
Timothy Rhyker Ranallo-Benavidez
Hello, I have a followup issue/question. We are trying to save space on our cluster, so if possible I would not like to have to save the output when converting...
Thanks so for much for the information. My use case is that I am running KMC on BAM files that are hosted on a remote S3 bucket. (More precisely, I...
Any ideas? I'm sure it has something to do with repetitive alignments. Adding "-M0" doesn't recover the alignment, unfortunately.
Thanks for the quick response. I am interested in the hidden option for kmc_tools. For our pipeline, we would like to be able to call GetCountersForRead on all the reads...
Thank you for your detailed response! The last option you explain is a good course of action for our pipeline. I have one final question. You mentioned sorting the A-kmers...
Hello, I was wondering if there was any update for a T2T catalog for TRGT. Thank you.
[BUG] Snakemake fails to detect the correct path of config.yaml file when `executor` plugin is used.
I am also getting this error. Using snakemake 8.25.5 and snakemake-executor-plugin-slurm v1.1.0. Even when putting the configfile statement before the workdir, it is looking in the workdir for the config...
Hello, I have added the files here: https://drive.google.com/drive/folders/1-RPypEsl85qqm9B8Gy3ILG_oaD4aq5S5?usp=drive_link
Hello, this sample is prepared from PBMCs purified from whole blood and we assume it to be a regular clonal sample. Specifically, it is a normal control for a tumor...
Hello, the total ONT coverage is 35x, the coverage over 100kb is 8x. The N50 is around 60kbp. It looks like the ONT data was from the ligation sequencing kit...