Nikita Tikhomirov
Nikita Tikhomirov
Hi! I have a similar issue, but in my case the `File wasn't available on site` only pops up for the `GFF` output. Example job ID is `MM_isb6ocg8`. I used...
This does solve my issue, thanks Carlos!
Bump! This would be super cool.
Bump! I ran into the same issue as of today. Would be cool to have it fixed, especially given that many linked-read pipelines produce tabbed headers by default.
Hi! I am using `ragtag correct` for a similar purpose — my reference organism diverged a few Mya from my drafts. In my case it seems to produce sensible results...
Hi! Maybe I can comment on this although I also have a kind of similar issue. `ragtag.py correct -h` says that the `-t` parameter is only passed to `minimap2`. In...
Update: multithreading seem to work better if I provide the `-t 64` argument outside of the`--mm2-params` string. First run of `minimap2` is said to run with `-t` unspecified then but...
I second that suggestion. The example `.conf` files showing some functionality are helpful, but it would be good to have the "master dummy config file" with *every* accessible parameter set...
Bump! I am also interested to look at a broader range of allele depth ratios from the nQuire output as I work with an octoploid genome.
Hi John! Same here. Minimizing interactions with the source code, I used the following workaround before running the minimap part: ``` # export draft assembly paths set -a; . ./draft_names_paths.txt;...