Jimin Tan

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icon company New York University icon location New York icon location NYU School of Medicine

Results 2 issues of Jimin Tan

Adding chromosome-wide prediction

6 comment

A lot of request was received on chromosome-wide predictions. I will add this feature soon.

enhancement

pyBigWig values method does not take argument numpy=True

1 comment

https://github.com/MiraldiLab/maxATAC/blob/83cd5d2b95037cb2b100f72c0545e244336de72c/maxatac/utilities/normalization_tools.py#L47 ```bash File "/gpfs/home/.conda/envs/maxatac/lib/python3.9/site-packages/maxatac/utilities/genome_tools.py", line 236, in chromosome_blacklist_mask return blacklist_bigwig_stream.values(chromosome, TypeError: values() takes no keyword arguments ``` Same format in another file: https://github.com/MiraldiLab/maxATAC/blob/83cd5d2b95037cb2b100f72c0545e244336de72c/maxatac/utilities/genome_tools.py#L239 Removing numpy=True seems to resolve the issue.