tallnuttcsiro

I get his error.. no idea. 1$ hal2assemblyHub.py 31.11.hal 31.11hub The job seems to have left a log file, indicating failure: /OSM/HOME-MEL/all29c/d/031/31.11/jobTree/jobs/t0/t0/t2/job Reporting file: /OSM/HOME-MEL/all29c/d/031/31.11/jobTree/jobs/t0/t0/t2/log.txt log.txt: ---JOBTREE SLAVE OUTPUT LOG---...

make test error

10

Get this error with make test. Also python can't find the modules. .../bin/sh: 1: sonLib_kvDatabaseTest: not found E/bin/sh: 1: sonLibTests: not found # E ERROR: testFastaReadWriteC (bioioTest.TestCase) ## Tests consistency...

parsnp ignores file called "1.fasta"

1

Interesting 'bug'. I had a sequence file called '1.fasta' and parsnp persistently ignored it from the alignment until I renamed it 1_seq.fasta. parsnp -c -p 30 -d seqs/ -o26 -r...

Hi, when I export a vcf file, the SNP states in the 'sample' columns appear to be wrong. The reference genome is often not recorded in state '0'. SNPs with...