Tom David Müller

Computation of Masses

1

Currently masses can only be computed from `AtomArray` objects (and objects of the related classes) or residue names from the Chemical Component Dictionary, using the `biotite.structure.info.mass()` function. However, especially for...

Python Binding for ViennaRNA

2

Python bindings for ViennaRNA are now available (and have been for a couple of years): https://www.tbi.univie.ac.at/RNA/ViennaRNA/refman/api_python.html We could think about replacing the call to the `RNAPlot` binary in `biotite.structure.graphics.plot_nucleotide_secondary_structure()` with...

`-write_cwl` does not print out default values

3

In the context of implementing CWL support in the OpenMS WebApps, writing the default values to `.cwl` files would be useful in order to suggest them in the UI.