Scott V. Edwards
Scott V. Edwards
Hi @wilkox, Thanks for a very nice package. Really helpful. However, I'm having trouble putting all my genomes on a common numerical axis starting from the gene on which they...
Hi Prof. Yu, Thank you for a wonderful package. It really helps my science alot. I am having trouble making a figure in which the paths between a subset of...
Hello - Great program! I am enjoying using it. Would it be possible to put in an option that allows you to change the angle of the text above each...
Hi again David - I figured I'd submit this as a separate issue. Again, I'd like to remove the target scaffold labels on the right of this coverage plot. I...
Hi David Great tool, I'm really finding it useful. Can you suggest a way to clean up dotplots of large regions (e.g., whole genomes)? I can't seem to figure out...
Dear Milan - Thank you for Dsuite, a very useful tool! I recently got a result with signficant clustering by the KS-homoplasy test but non-significant D-statistic. Is this expected? The...
Hi lindeloev - I really love your program! However, using default values for parameters, it seems to often find changepoints for smaller peaks in the data than one would expect...
Hi Neng, Thank you for a very nice tool. I have been working with Heng a bit on some bird pangenome studies (see: https://www.biorxiv.org/content/10.1101/2025.02.11.637762v1.article-metrics). We have paf files for each...
Hello - Great package! Using default parameters, I noticed that the bed file produced has some intervals overlapping others. Is there a way to avoid this? Example from the first...
Hi again Daniel - I am doing a little comparison among RepeatMasker, Satellite Repeat Finder and Ultra for annotating some interesting VNTRs that the first two tools missed but which...