Shinya Suzuki
Shinya Suzuki
The build time of the Prokka version 1.13.4--pl526_0 at Biocontainers is 2018-08-23. Prokka uses tbl2asn internally, but as reported in [this issue](https://github.com/tseemann/prokka/issues/139), the software does not succeed after one year...
## Summary Thank you for developing a very nice documentation tool. As per the subject, if the manuscript is added to .gitignore, it is not contained for build results or...
Although the second argument of remove-chimeras-denovo is an output directory name, it was expressed as an output file name. Fixed this.
The output file name of build_biom_table was `all.seq.fa`, but in workflow, it was `all.seqs.fa`. I aligned it with workflow.
The suffix of the output file of deblur_seqs was ".clean", but it does not match with default `--file_type` parameter in build_biom_table (`.trim.derep.no_artifacts.msa.deblur.no_chimeras`). I aligned the suffix with it. I checked...
This PR is following the variable name modification in #195 Although deblur workflow command creates output directly if it is not existed, build_biom_table command does not. I aligned this behavior...
Fixed incorrect description about the biom-format table building.
When I used remove-chimeras-denovo command after using deblur-seqs following the pipeline proposed in supplementary figure of deblur paper, the output is missing. As debular.log only said the error happens, I...
When I used deblur multiple-seq-alignment command, I face an error as follow: ``` $ deblur multiple-seq-alignment test.fasta.no_artifacts test.fasta.no_artifacts.ma Traceback (most recent call last): File "INSTALL_DIR/bin/deblur", line 684, in deblur_cmds() File...
When I used `trim` command, I face an error as follows: ``` $ deblur trim -t 200 test.fasta.gz test_trim.fasta.gz Traceback (most recent call last): File "INSTALL_DIR/bin/deblur", line 684, in deblur_cmds()...