superbsky

**Describe the bug** Unable to launch the latest version from GitHub w/ ImportError: cannot import name 'escape' from 'jinja2' **To Reproduce** Steps to reproduce the behavior: 1. mkdir -p data/cwl_wes/db...

I started a discussion in dockstore (one of the TRS implementation) repository to find out if it is possible to combine existing tools for the TRS->CWL->TES execution chain use case:...

TypeError: __init__() got an unexpected keyword argument 'no_args_is_help'

2

I am getting this error after the installation: TypeError: __init__() got an unexpected keyword argument 'no_args_is_help' Steps to reproduce: python -V Python 3.6.9 pip3 -V pip 21.1.2 from /home/***/.local/lib/python3.6/site-packages/pip (python...

Severe loss of split‑alignment evidence and downstream SNP accuracy in BWA‑MEM2 v2.2.1

2

Summary When aligning the same NA12878 FASTQs against GRCh38 with the default presets, bwa‐mem2 2.2.1 produces ≈2.8 × fewer supplementary records, drops ≈2.5 M high‑MAPQ (60) alignments, and ultimately reduces SNP...