Yi Sun

thank you @SimonBin It is my very first attempt to use dllearner. I just download it and used the 'cli' utility in dllearner-1.4.0's bin folder. I used the father_oe_inv.conf as...

yes the original father_oe_inv.conf works.. I'm trying different config options and hopefully to find out what was wrong... my conf file looks like below.. thanks ``` // declare some prefixes...

just to add, if I move this line https://github.com/CellProfiler/core/blob/ad79fe2aae0711c3215c81704d0925a99888fbe0/cellprofiler_core/pipeline/_pipeline.py#L287 out of the try-catch, the encoding error goes away, but CP does not produce any output, it says, no images passed...

I have the same question, have you found an answer to the question? I can see the toy-ppi-feats.npy is a binary array of [14755,50] but I'm not sure how the...

Thanks @kevinjohncutler I have 12G per GPU, and I'm running the example notebook here [mono_channel_3D.ipynb](https://github.com/kevinjohncutler/omnipose/blob/main/docs/examples/mono_channel_3D.ipynb) I'm running this Jupyterlab notebook inside a singularity container. I can see from nvidia-smi output,...

> Is it known why the collection element names changed? I didn't change the names, but the orders. The planemo test is complaining about output order is wrong, so I...

I got confused a bit. with conda resolution `planemo test . ` give successful results without conda resolution `planemo test --biocontainers .` give failed test results how should I solve...

> Maybe a dependency is missing? Container tests are more strict and maybe it complains about a missing dependency ? yes, it complains about `libtiff` no module found, which is...

I found these: with `planemo test --biocontainers .` pylibtiff has to be version 0.4.2 for the tests to pass, other versions will fail. with `planemo test .` the latest pylibtiff==0.6.1and...

Hi @B0r1sD @kostrykin As I remember the motivation for this was just to get started with BIA in Galaxy, and the plan was to rework it once the BIA's API...