sunriseTM

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Hi,I got a screenshot from IGV, as below: ![image](https://user-images.githubusercontent.com/70903661/222879785-f6d25ed1-a938-406b-a982-75fb8891c6a3.png) the upper one is made by aligning PacBio Hifi mRNA reads (Iso-seq) using magicblast, and the one below is Illumina mRNA...

I have the same confusion. If a orthogroup only contain 2 genes from a single species, I noticed Agora will construct a ancesral gene corresponding to the two genes, but...