suminwei
suminwei
Hi, I'm running into issue when running eval.py: `CUDA_VISIBLE_DEVICES=0 python $EVAL --drop_out --k 10 --models_exp_code $DATA_ROOT_DIR/training_2/results/task_2_tumor_subtyping_CLAM_75_s1 --save_exp_code task_2_tumor_subtyping_CLAM_75_s1_cv --task task_2_tumor_subtyping --model_type clam_sb --results_dir results --data_root_dir $DATA_ROOT_DIR` I get the following...
Hello, I am having some trouble running bazel. I installed from source, and when I try to run the following: `bazel build inception/imagenet_train ` I get this error: `WARNING: Output...
Hello, I am trying to run step 2.2 presorting in DeepPATH, and I seem to not be able download the right JSON file that contains all the necessary information. What...
Hi, I'm running into the following error when trying to run create_splits_seq.py in a conda environment with CONCH and CLAM installed: python create_splits_seq.py --task task_2_tumor_subtyping --seed 1 --label_frac 1 --k...
heatmap
Hi, I am running into the following error when running create_heatmaps.py [I'm using the CONCH encoder]. ``` Error message is: Traceback (most recent call last): File "path/to/CLAM/create_heatmaps.py", line 369, in...
Hi, I am getting the following error when trying to run histoqc on .svs files. Command: `python -m histoqc -c v2.1 -n 3 "./input_svs_test/*.svs"` Error: ` 2024-07-03 15:43:52,680 - INFO...
Hi, I was wondering if there is document that explains what each metric being quantified by HistoQC means (for instance - grayscale brightness. chan1_brightness, chan2_brightness, rms_contrast, final_energy)? I'm currently trying...
Hi, I just wanted to double check how to properly set patch_level and seg_level when running create_patches_fp.py. If I have an svs file with the following pyramid levels: Base (40x),...
Hello, I'd like to ask for your help with the following: How may I use the eval.py script with an existing model trained on two classes (ex. A and C),...