Sujay Patil
Sujay Patil
This PR addresses issue #878
There is generic code in markdowngen for computing: * list of all slots that directly belong to a class * list of all inherited slots which are useful helper methods...
The [uri_link()](https://github.com/linkml/linkml/blob/main/linkml/generators/docgen.py#L294-L304) method in docgen.py, makes a call to [uri()](https://github.com/linkml/linkml/blob/main/linkml/generators/docgen.py#L282-L292) which is another method implemented in docgen.py. The `uri()` method makes a call to [get_uri()](https://github.com/linkml/linkml-runtime/blob/main/linkml_runtime/utils/schemaview.py#L785-L822) from SchemaView which is the...
There is a small bug in linkml-runtime schemaview, where the self.schema_map attribute is not set properly when there are imported schema files being applied to the main schema file.
**Is your feature request related to a problem? Please describe.** Run the [black](https://black.readthedocs.io/en/stable/) code formatter to retroactively format the codebase per black [standards](https://black.readthedocs.io/en/stable/the_black_code_style/current_style.html). **Describe the solution you'd like** Run the...
Hypenated class names are not valid class names in LinkML. For example, consider this schema: ``` id: "http://example.org/hyphenated-model" title: Hyphenated model test name: hyphenated-model classes: abc-xyz: description: This is a...
**Describe the bug** `_if_missing` appears as an annotation on gen-doc pages. How is it related to FAQ: https://github.com/linkml/linkml/blob/main/docs/faq/tools.md#what-does-_if_missing-mean-in-my-json-output? We observe this on the MIxS and NMDC documentation pages. Example: https://microbiomedata.github.io/nmdc-schema/biotic_relationship/#annotations
Optimize the rendering of _Applicable classes_ section in slot documentation pages. This PR needs to be coordinated with https://github.com/linkml/linkml-runtime/pull/300 Some tests on this PR will not go through because it...
If we look at the output of `gen-shex` on the [kitchen sink schema](https://github.com/linkml/linkml/blob/main/tests/test_generators/input/kitchen_sink.yaml) in our testing framework by running the following command: ```bash poetry run gen-shex tests/test_generators/input/kitchen_sink.yaml ``` and turn...
There are a number of very useful docgen jinja template customizations that have been made for the iSamples project, repo can be found here: https://github.com/isamplesorg/metadata The goal of this issue...