Gregory Stupp

I was able to recreate the figure with the following code: ``` fakedata = crossing(bats = c("L", "R"), AB = c(10, 100, 1000, 10000)) fakedata %>% mutate(H = .3 *...

Thanks for the quick response!! It still didn't work however. Example: `owltools doid-edit.owl --merge tmp.ttl -o -f ofn --prefix skos "http://www.w3.org/2004/02/skos/core#" doid-edit.owl` where `doid-edit.owl` is: https://github.com/DiseaseOntology/HumanDiseaseOntology/blob/master/src/ontology/doid-edit.owl and tmp.ttl contains: ```...

Looks like there's a bunch. Here's some more examples: https://mygene.info/v3/gene/145858 https://www.ncbi.nlm.nih.gov/gene?cmd=retrieve&dopt=default&list_uids=145858 https://mygene.info/v3/gene/285311 https://www.ncbi.nlm.nih.gov/gene?cmd=retrieve&dopt=default&list_uids=285311 https://mygene.info/v3/gene/55672 https://www.ncbi.nlm.nih.gov/gene?cmd=retrieve&dopt=default&list_uids=55672

Can we please get this updated? Thank you :pray:

Hi Chris, I was thinking about how to map wikidata exposure terms to ECTO. For chemical exposures (the bulk of exposure terms), many can be easily mapped. NIOSH has added...

These are likely due to errors in mapping and/or inconsistencies with the way compounds are represented. For example, there is an item for [Arsenic](https://www.wikidata.org/wiki/Q871) the element and [Arsenic](https://www.wikidata.org/wiki/Q21060492) the chemical...

We try to follow design patterns when they exist and define them when they don't. If we define them, we try to document them as best we can so that...

Sebastian's code for accessing pubchemrdf: https://bitbucket.org/sulab/wikidatabots/src/30b02a731396501c211a983d0d35a7d53cbdd88b/compounds/chemlib.py?at=master&fileviewer=file-view-default

The compound targets, assays, and metabolites would also be useful! https://www.ebi.ac.uk/chembl/compound/inspect/CHEMBL1064

This information is available from the API Docs: https://www.ebi.ac.uk/chembl/api/data/docs Indications: https://www.ebi.ac.uk/chembl/api/data/drug_indication?format=json Mechanisms: https://www.ebi.ac.uk/chembl/api/data/mechanism?format=json Metabolites: https://www.ebi.ac.uk/chembl/api/data/metabolism?format=json etc...