Stephan Schiffels

DSL2: Sex determination output sometimes listed on Sample, sometimes on library level

2

In Eager's multiqc-output, where the results from SexDetERRmine are listed, varies. In cases where there are multiple libraries for a sample, the output is listed at the sample level (because...

Single-strand mode is not appropriate with unmerged R2 reads

1

We realised that the current damage model used in `--singleStrandMode` is not appropriate if the input pileup data contains alleles from unmerged R2 reads from paired-end sequencing. Currently, this means,...

v1.5.2 introduced a feature whereby lower-case letters in the pileup-input are automatically parsed as capital-letters and thereby fully considered when calling the alleles. This may be appropriate in many cases,...

It has been suggested to me that in cases where diploid and haploid chromosomes are present, calling should ideally differentiate between the two. So for example, for human genomes, we...

add linux-aarch64 built

2

As requested on Bioconda [here](https://github.com/bioconda/bioconda-recipes/pull/53566), we would like to add a linux-aarch64 built.