strawberry789

magick for R4.0.2

1

Is there a magick for R version 4.0.2? I have trouble installing it in R. Thanks.

Error in addBmatToSnap

1

I ran this: snaptools snap-add-bmat \ --snap-file=file.snap \ --bin-size-list 1000 5000 10000 \ --verbose=True and then, showBinSizes("file.snap") showing, 1000, 5000, 10000 But when I ran afterwards: object = addBmatToSnap(object, bin.size=5000,...

Weird promoter ratio versus log10(UMI) curve

2

This is what my promoter ratio versus log10(UMI) curve looks like:  What's wrong with this? And how should I select the quality barcodes based on this graph? I tried...

Drosophila melanogaster correspondence for mouse "gencode.vM16.gene.bed" to run Gene-based annotation

1

Hello, I'm trying to use snapATAC to analyze my drosophila single-cell ATAC data. Where would I find the drosophila version for the mouse gencode.vM16.gene.bed? What other drosophila-specific databases/files would I...

Hello, I converted my Seurat objects (scRNA + scATAC) to a Liger object using the "seuratToLiger" function: data

Seurat processed dataset as input into MultiK

6

How can I use a processed single cell dataset from Seurat (before clustering) as an input into MultiK?

When I entered: `scenicOptions

Seurat rds input

1

Is it possible to import a Seurat object (filtered) for cellcall downstream analyses? Thanks!