Stephen Kelly
Stephen Kelly
As described here; https://www.commonwl.org/v1.0/CommandLineTool.html#SchemaDefRequirement https://www.commonwl.org/user_guide/19-custom-types/index.html Right now only `record` and `enum` classes are able to be used as custom data types. Would be great if this could be expanded to...
This is the same issue as described here; https://github.com/common-workflow-language/cwltool/issues/1403 Using the same CWL files as in that Issue with `cwltool`, when you run Toil with a CWL that uses `InitialWorkDirRequirement`...
I am trying to install Toil using `conda` as listed [here](https://anaconda.org/bioconda/toil) and it does not seem to work. Setup: ``` $ wget https://repo.anaconda.com/miniconda/Miniconda3-4.7.12.1-Linux-x86_64.sh $ bash Miniconda3-4.7.12.1-Linux-x86_64.sh -b -p conda $...
As can be seen in the source code here: https://github.com/GuangchuangYu/ChIPseeker/blob/master/R/upsetplot.R The `upsetplot` function makes a call to `upset`, without returning anything. This causes problems if you want to be able...
When you try to stage input files with an InitialWorkDirRequirement, and the files have the same name, they normally trigger an error that halts the workflow. However, if you are...
Is S3 file access already supported? I could not find it mentioned in the documentation. It was previously mentioned in this issue; https://github.com/common-workflow-language/cwltool/issues/539 However that one was closed after `http`...
After upgrading from `chia_plot` verision 0.0.5 to 0.1.1 (on [Windows](https://github.com/stotiks/chia-plotter/releases)), I saw a ~50% decrease in speed on the same system with the same configuration. command used with 0.0.5: ```...
Related to #819 and #805 By using a RAM block cache as small as 40GB, almost 50% of writes to a temp2 SSD volume can be prevented. If would be...
Having trouble getting jobs to run inside the container. I tried using the `sgeadmin` account as described in the README, but it is not working. Downloaded & ran the container...
Trying to build the image from the included Docker file (using my fork), I keep getting this error: ``` $ docker build -t stevekm/docker-sge . The command '/bin/sh -c apt-get...