Stephanie Won

Could not find keys in columns of adata.obs or in data.var_names

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- [x] I have checked that this issue has not already been reported. - [x] I have confirmed this bug exists on the latest version of scanpy. - [ ]...

I was running this code `sc.pl.umap(adata, color = ['KIR3DL1'], frameon = False, layer = 'scvi_normalized')` to create umap but it gave me an error message with empty heatmap color bar...

[QST]: Steiner tree algorithm

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### What is your question? HI, I understand that cuGraph does not support the Steiner algorithm. I have a directed and unweighted graph that I need to analyze using a...

[QST]: MST cuGraph RuntimeError: RAFT failure, how to fix?

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### What is your question? I'm trying to conduct a Steiner Tree approximation with several terminal nodes (and subgraphs I need to analyze). However, whenever I try to iterate through,...

[QST]: `cugraph.induced_subgraph()` not recognizing graph argument

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### What is your question? Despite the graph (`G`) being in cugraph.Graph format, it's giving me the `TypeError: Argument 'graph' has incorrect type (expected pylibcugraph.graphs._GPUGraph, got dict)` message. The bolded...

[QST]: cuGraph `shortest_path` vs. NetworkX shortes_path difference?

3

### What is your question? I looked at the [documentation ](https://docs.rapids.ai/api/cugraph/nightly/api_docs/api/cugraph/cugraph.shortest_path/#cugraph.shortest_path) for cuGraph `shorts_path()' and noticed that it's different from NetworkX `[shortest_path()](https://networkx.org/documentation/stable/reference/algorithms/generated/networkx.algorithms.shortest_paths.generic.shortest_path.html#networkx.algorithms.shortest_paths.generic.shortest_path)`. When I specify the target parameter for `short_path(),`...

Solving environment taking forever when trying to update conda

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### Checklist - [X] I added a descriptive title - [X] I searched open reports and couldn't find a duplicate ### What happened? I tried to update my conda in...

[QST] Installing RAPIDS 24.06 not recognizing UCX version

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I was trying to install rapids 24.06 but give this error message ``` warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY failed LibMambaUnsatisfiableError: Encountered problems while solving: - package rapids-24.06.00-cuda11_py310_240605_g9ea7562_0 requires...

Error when trying to open seqlite file (> 2GB)

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I get an error message when opening the `.sqlite` file (12GB). I adjusted the max file size at settings, but still getting error messages... Does the extension not work on...

Issue downloading data using manifest TSV file

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I'm trying to download HHS (WGS raw sequencing) data, a total of 3.8k samples, but none are getting downloaded. This is the manifest file that I was attempting to obtain...